3D Deep Learning Segmentation

3D Deep Learning Segmentation

This guide will walk you through the excercises for this workshop

Key Learning Objectives

By the end of these notebooks, you should understand:

• How deep learning models for cell segmentation work

• The differences between Cellpose and StarDist approaches

• How to use Napari for 3D visualization

• How to evaluate and compare segmentation results

Citation

Corbat, A. A. (2026). Workshop on 3D Deep Learning Segmentation. Zenodo. https://doi.org/10.5281/zenodo.18187178