Resources

Compilation of tools and resources for image analysis focused on what we will use.

Course Material

• https://zenodo.org/communities/lsmunimayor

Workshops

• The instructions to generate the course folder in Windows using powershell are here.

General

Desktop software for image analysis.

• https://fiji.sc/
• https://napari.org/

Community

Spaces to interact and discuss about image analysis.

• https://forum.image.sc/
• https://imagesc.zulipchat.com/

Compilations

Other curated lists of tools and resources for scientific image analysis.

• https://github.com/epfl-center-for-imaging/awesome-scientific-image-analysis/
• https://github.com/hallvaaw/awesome-biological-image-analysis/

Additional datasets

• Tribolium z-stack https://git.mpi-cbg.de/rhaase/clij2_example_data/blob/master/lund1051_resampled.tif