Program

🗓️ Day 1: Light-Sheet principles and digital images

Monday, 5 Jan 2026

🧠 Theory morning session (09:00–11:00)

• 09:00–09:15 - Welcome session and course overview
• 09:15–10:00 - Principles of light-sheet microscopy (Marina)
• 10:00–11:00 - Experimental design and sample mounting (Marina)

🪧 Poster session and coffee break (11:00–11:45)

🧠 Theory morning session (11:45–13:00)

• 11:45–12:30 - Visualization and processing of digital images (Agustín)
• 12:30–13:00 - Best practices in microscopy data management (Bruno)

🥗 Lunch break (13:00–14:00)

🖥️ Practical afternoon session (14:00–17:00)

• 14:00–14:30 - Talk from MicroxChile
• 14:30–15:30 - Visualization of 2D images (Agustín)
• 15:30–17:30 - Visualization of 3D images (Bruno)

🗓️ Day 2: Image processing and multiview reconstruction

Tuesday, 6 Jan 2026

🧠 Theory morning session (09:00–11:00)

• 09:00–10:00 - Image processing and analysis (Agustín)
• 10:00–11:00 - Multiview reconstruction and tissue cartography (Bruno)

🪧 Poster session and coffee break (11:00–11:45)

🖥️ Practical morning session (11:45–13:00)

• 11:45–13:00 - Pre-processing, denoising, segmentation (Marina)

🥗 Lunch break (13:00–14:00)

🖥️ Practical afternoon session (14:00–17:00)

• 14:00–14:30 - Talk from Galenica
• 14:30–16:00 - ImageJ macro programming (Marina)
• 16:00–17:30 - Multiview reconstruction (Bruno)

🗓️ Day 3: Machine learning and advanced workflows

Wednesday, 7 Jan 2026

🧠 Theory morning session (09:00–10:30)

• 09:00–10:30 - Deep learning (Agustín/Bruno)

🫖 Coffee break (10:30-11:00)

🖥️ Practical morning session (11:00–12:30)

• 11:00–11:45 - Object-classification, dimensionality reduction and clustering (Marina)
• 11:45–12:30 - 3D Deep Learning Segmentation (Agustín)
• 12:30–13:00 - Talk from Bruker

🥗 Lunch break (13:00–14:00)

🖥️ Practical afternoon session (14:00–17:00)

• 14:00–16:00 - Tissue cartography (Bruno)
• 16:00–17:30 - Cell tracking (Bruno)

🗓️ Day 4: Scientific applications and project work

Thursday, 8 Jan 2026

🧠 Theory morning session (09:00–11:00)

• 09:00–09:30 - Talk Bruno
• 09:30–10:00 - Talk Marina
• 10:00–10:30 - Talk Charlotte
• 10:30–11:00 - Talk Leo

🫖 Coffee break (11:00–11:30)

🖥️ Practical morning session (11:30–13:00)

• 11:30–13:00 - Project work (Groups)

🖥️ Practical afternoon session (14:00–17:00)

• 14:00–17:30 - Project work (Groups)

🗓️ Day 5: Project work and presentations

Friday, 9 Jan 2026

🖥️ Practical morning session (09:00–11:00)

• 09:00–11:00 - Project work (Groups)

🫖 Coffee break (11:00–11:30)

🖥️ Practical morning session (11:30–13:00)

• 11:30–13:00 - Project work (Groups)

🧠 Theory afternoon session (14:00–17:00)

• 14:00–16:30 - Group presentations (Groups)
• 16:30–17:00 - Closing remarks (Organizers)
• 17:00–onwards - Group dinner (Everyone)